Thread: How to implement the skip errors for copy from ?

How to implement the skip errors for copy from ?

From
xbzhang
Date:

I want to implement the skip errors for copy from,lik as :
create table A (c int primary key);
copy A from stdin;
1
1
2
\.

copy will failed:
ERROR: duplicate key violates primary key constraint "CC_PKEY" 
CONTEXT: COPY CC, line 2: "1"

I want skip the error, and continue to copy the reset of tuple. The result
will be that there are two rows in table A: 1 and 2.

how to implement that ? Anybody give me some suggestion?


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

Re: How to implement the skip errors for copy from ?

From
Pavel Stehule
Date:



2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:

I want to implement the skip errors for copy from,lik as :
create table A (c int primary key);
copy A from stdin;
1
1
2
\.

copy will failed:
ERROR: duplicate key violates primary key constraint "CC_PKEY" 
CONTEXT: COPY CC, line 2: "1"

I want skip the error, and continue to copy the reset of tuple. The result
will be that there are two rows in table A: 1 and 2.

how to implement that ? Anybody give me some suggestion?

you should to reimplement a copy procedure to use a subtransactions. Using subtransaction for any row is too expensive, but you can do subtransaction per 1000 rows, and when some exception is raised, then store data per one row/one subtransaction.

Regards

Pavel Stehule
 


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn


Re: How to implement the skip errors for copy from ?

From
Alvaro Herrera
Date:
Pavel Stehule wrote:
> 2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
> 
> >
> > I want to implement the skip errors for copy from,lik as :
> > create table A (c int primary key);
> > copy A from stdin;
> > 1
> > 1
> > 2
> > \.
> >
> > copy will failed:
> > ERROR: duplicate key violates primary key constraint "CC_PKEY"
> > CONTEXT: COPY CC, line 2: "1"
> >
> > I want skip the error, and continue to copy the reset of tuple. The result
> > will be that there are two rows in table A: 1 and 2.
> >
> > how to implement that ? Anybody give me some suggestion?
> 
> you should to reimplement a copy procedure to use a subtransactions. Using
> subtransaction for any row is too expensive, but you can do subtransaction
> per 1000 rows, and when some exception is raised, then store data per one
> row/one subtransaction.

See http://pgloader.io/ for a ready-made solution.

-- 
Álvaro Herrera                http://www.2ndQuadrant.com/
PostgreSQL Development, 24x7 Support, Training & Services



Re: How to implement the skip errors for copy from ?

From
xbzhang
Date:
Use subtransaction , the tuples that had inserted into heap  must be inserted again  when some exception is raised,
it is too expensive.
My solution is :
1. delete the tuple that caused the error tuple;
2. release all the resources when  inserting  the tuple;
3. continue insert next tuple
Is it feasible?  Anybody give me some suggestion?


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

 
Date: 2014-06-17 02:37
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
Pavel Stehule wrote:
> 2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
>
> >
> > I want to implement the skip errors for copy from,lik as :
> > create table A (c int primary key);
> > copy A from stdin;
> > 1
> > 1
> > 2
> > \.
> >
> > copy will failed:
> > ERROR: duplicate key violates primary key constraint "CC_PKEY"
> > CONTEXT: COPY CC, line 2: "1"
> >
> > I want skip the error, and continue to copy the reset of tuple. The result
> > will be that there are two rows in table A: 1 and 2.
> >
> > how to implement that ? Anybody give me some suggestion?
>
> you should to reimplement a copy procedure to use a subtransactions. Using
> subtransaction for any row is too expensive, but you can do subtransaction
> per 1000 rows, and when some exception is raised, then store data per one
> row/one subtransaction.
 
See http://pgloader.io/ for a ready-made solution.
 
--
Álvaro Herrera                http://www.2ndQuadrant.com/
PostgreSQL Development, 24x7 Support, Training & Services
 
 
 
 
-----
???????????
????:AVG - www.avg.com
??:2013.0.3480 / ?????:3955/7685 - ????:06/16/14
 

Re: How to implement the skip errors for copy from ?

From
Pavel Stehule
Date:



2014-06-17 7:30 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
Use subtransaction , the tuples that had inserted into heap  must be inserted again  when some exception is raised,
it is too expensive.
My solution is :
1. delete the tuple that caused the error tuple;
2. release all the resources when  inserting  the tuple;
3. continue insert next tuple
Is it feasible?  Anybody give me some suggestion?

no, it should not work - after any exception some memory structures should be in undefined state. Errors in PostgreSQL are destructive and any error must be followed by ROLLBACK.

Subtransaction for any row is expensive, but subtransaction for some block is cheap

Regards

Pavel
 


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

 
Date: 2014-06-17 02:37
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
Pavel Stehule wrote:
> 2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
>
> >
> > I want to implement the skip errors for copy from,lik as :
> > create table A (c int primary key);
> > copy A from stdin;
> > 1
> > 1
> > 2
> > \.
> >
> > copy will failed:
> > ERROR: duplicate key violates primary key constraint "CC_PKEY"
> > CONTEXT: COPY CC, line 2: "1"
> >
> > I want skip the error, and continue to copy the reset of tuple. The result
> > will be that there are two rows in table A: 1 and 2.
> >
> > how to implement that ? Anybody give me some suggestion?
>
> you should to reimplement a copy procedure to use a subtransactions. Using
> subtransaction for any row is too expensive, but you can do subtransaction
> per 1000 rows, and when some exception is raised, then store data per one
> row/one subtransaction.
 
See http://pgloader.io/ for a ready-made solution.
 
--
Álvaro Herrera                http://www.2ndQuadrant.com/
PostgreSQL Development, 24x7 Support, Training & Services
 
 
 
 
-----
???????????
????:AVG - www.avg.com
??:2013.0.3480 / ?????:3955/7685 - ????:06/16/14
 

Re: How to implement the skip errors for copy from ?

From
xbzhang
Date:
one resource owner per tuples, when error happens, only release resource owner belong to error tuple.
Why some memory structures should be in undefined state? Can you give some examples?

 
Date: 2014-06-17 14:01
To: xbzhang
Subject: Re: Re: [HACKERS] How to implement the skip errors for copy from ?



2014-06-17 7:30 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
Use subtransaction , the tuples that had inserted into heap  must be inserted again  when some exception is raised,
it is too expensive.
My solution is :
1. delete the tuple that caused the error tuple;
2. release all the resources when  inserting  the tuple;
3. continue insert next tuple
Is it feasible?  Anybody give me some suggestion?

no, it should not work - after any exception some memory structures should be in undefined state. Errors in PostgreSQL are destructive and any error must be followed by ROLLBACK.

Subtransaction for any row is expensive, but subtransaction for some block is cheap

Regards

Pavel
 


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

 
Date: 2014-06-17 02:37
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
Pavel Stehule wrote:
> 2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
>
> >
> > I want to implement the skip errors for copy from,lik as :
> > create table A (c int primary key);
> > copy A from stdin;
> > 1
> > 1
> > 2
> > \.
> >
> > copy will failed:
> > ERROR: duplicate key violates primary key constraint "CC_PKEY"
> > CONTEXT: COPY CC, line 2: "1"
> >
> > I want skip the error, and continue to copy the reset of tuple. The result
> > will be that there are two rows in table A: 1 and 2.
> >
> > how to implement that ? Anybody give me some suggestion?
>
> you should to reimplement a copy procedure to use a subtransactions. Using
> subtransaction for any row is too expensive, but you can do subtransaction
> per 1000 rows, and when some exception is raised, then store data per one
> row/one subtransaction.
 
See http://pgloader.io/ for a ready-made solution.
 
--
Álvaro Herrera                http://www.2ndQuadrant.com/
PostgreSQL Development, 24x7 Support, Training & Services
 
 
 
 
-----
???????????
????:AVG - www.avg.com
??:2013.0.3480 / ?????:3955/7685 - ????:06/16/14
 

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Re: How to implement the skip errors for copy from ?

From
Pavel Stehule
Date:



2014-06-17 8:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
one resource owner per tuples, when error happens, only release resource owner belong to error tuple.
Why some memory structures should be in undefined state? Can you give some examples?

there can be raised any exception -- any non fatal exception. I remember, when I wrote some similar without exception, then it was very unstable.

Pavel
 

 
Date: 2014-06-17 14:01
To: xbzhang
Subject: Re: Re: [HACKERS] How to implement the skip errors for copy from ?



2014-06-17 7:30 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
Use subtransaction , the tuples that had inserted into heap  must be inserted again  when some exception is raised,
it is too expensive.
My solution is :
1. delete the tuple that caused the error tuple;
2. release all the resources when  inserting  the tuple;
3. continue insert next tuple
Is it feasible?  Anybody give me some suggestion?

no, it should not work - after any exception some memory structures should be in undefined state. Errors in PostgreSQL are destructive and any error must be followed by ROLLBACK.

Subtransaction for any row is expensive, but subtransaction for some block is cheap

Regards

Pavel
 


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

 
Date: 2014-06-17 02:37
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
Pavel Stehule wrote:
> 2014-06-16 11:46 GMT+02:00 xbzhang <xbzhang@kingbase.com.cn>:
>
> >
> > I want to implement the skip errors for copy from,lik as :
> > create table A (c int primary key);
> > copy A from stdin;
> > 1
> > 1
> > 2
> > \.
> >
> > copy will failed:
> > ERROR: duplicate key violates primary key constraint "CC_PKEY"
> > CONTEXT: COPY CC, line 2: "1"
> >
> > I want skip the error, and continue to copy the reset of tuple. The result
> > will be that there are two rows in table A: 1 and 2.
> >
> > how to implement that ? Anybody give me some suggestion?
>
> you should to reimplement a copy procedure to use a subtransactions. Using
> subtransaction for any row is too expensive, but you can do subtransaction
> per 1000 rows, and when some exception is raised, then store data per one
> row/one subtransaction.
 
See http://pgloader.io/ for a ready-made solution.
 
--
Álvaro Herrera                http://www.2ndQuadrant.com/
PostgreSQL Development, 24x7 Support, Training & Services
 
 
 
 
-----
???????????
????:AVG - www.avg.com
??:2013.0.3480 / ?????:3955/7685 - ????:06/16/14
 

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Re: How to implement the skip errors for copy from ?

From
Amit Kapila
Date:
On Tue, Jun 17, 2014 at 12:16 PM, xbzhang <xbzhang@kingbase.com.cn> wrote:
>
> one resource owner per tuples, when error happens, only release resource owner belong to error tuple.
> Why some memory structures should be in undefined state? Can you give some examples?

There might be some LWlocks which might have been taken
before error and you won't know which one to free.  Another
is that postgres uses memory context to allocate/free memory
in most places, so there can be allocated memory which needs
to be released, transaction/sub-transaction abort takes care of all
such and many more similar things.

With Regards,
Amit Kapila.
EnterpriseDB: http://www.enterprisedb.com

Re: How to implement the skip errors for copy from ?

From
xbzhang
Date:
LWlocks can record in resource owner per tuples, so they can be released 
at rigth way, but the memory allocated on memory context is one problem.
Are there any others problems?


张晓博   研发二部

北京人大金仓信息技术股份有限公司

地址:北京市海淀区上地西路八号院上地科技大厦4号楼501

邮编:100085

电话:(010) 5885 1118 - 8450

手机:15311394463

邮箱:xbzhang@kingbase.com.cn

 
Date: 2014-06-17 17:10
To: xbzhang
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
On Tue, Jun 17, 2014 at 12:16 PM, xbzhang <xbzhang@kingbase.com.cn> wrote:
>
> one resource owner per tuples, when error happens, only release resource owner belong to error tuple.
> Why some memory structures should be in undefined state? Can you give some examples?

There might be some LWlocks which might have been taken
before error and you won't know which one to free.  Another
is that postgres uses memory context to allocate/free memory
in most places, so there can be allocated memory which needs
to be released, transaction/sub-transaction abort takes care of all
such and many more similar things.

With Regards,
Amit Kapila.
EnterpriseDB: http://www.enterprisedb.com

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检查工具:AVG - www.avg.com
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Re: How to implement the skip errors for copy from ?

From
Tom Lane
Date:
xbzhang <xbzhang@kingbase.com.cn> writes:
> LWlocks can record in resource owner per tuples, so they can be released at rigth way, but the memory allocated on
memorycontext is one problem.Are there any others problems?
 

See AbortSubTransaction(), CleanupSubTransaction(), and the rather large
number of subroutines they call.  Almost everything that code does is
connected to cleaning up something that might have been left unfinished
after an elog(ERROR) took control away in the middle of some code
sequence.

In addition, you can't just wave your hands and presto the bad tuple is
not there anymore.  For example, the failure might have been a unique key
violation in some index or other.  Not only is the bad tuple already on
disk, but possibly so are index entries for it in other indexes.  In
general the only way to get rid of those index entries is a VACUUM.
So you really have to have a subtransaction whose XID is what you mark
the new tuple with, and then rolling back the subtransaction is what
causes the new tuple to not be seen as good.  (Actually getting rid of
it will be left for the next VACUUM.)
        regards, tom lane



Re: How to implement the skip errors for copy from ?

From
xbzhang
Date:
Use subtraction is very inefficient, a project called pg_bulkload support the 
skip errors ,and it does not useing subtraction. It performance is very good. 
 So I want to imitate pg_bulkload to implementation skip errors of copy.
if i do the following thing to copy :
1. disable all of trigger of table;
2. only skip the following errors:
     * format error of tuple;
     * check constraint violation;
     * unique or primary key constraint violation;
    other errors will be abort current transcation except above three errors.
3.  bad tuple will be deleted and the resource owner per tuples is reseased 
    when a unique key violation,  xmax of the tuple will be marked to current
    transaction id as it not be seen as good, and all of index entries of the bad
    tuple will be real delete at next VACUUM.
Is it right to skip errors for copy from?


From: Tom Lane
Date: 2014-06-17 21:40
To: xbzhang
Subject: Re: [HACKERS] How to implement the skip errors for copy from ?
xbzhang <xbzhang@kingbase.com.cn> writes:
> LWlocks can record in resource owner per tuples, so they can be released��at rigth way, but the memory allocated on memory context��is one problem.Are there any others problems?
 
See AbortSubTransaction(), CleanupSubTransaction(), and the rather large
number of subroutines they call.  Almost everything that code does is
connected to cleaning up something that might have been left unfinished
after an elog(ERROR) took control away in the middle of some code
sequence.
 
In addition, you can't just wave your hands and presto the bad tuple is
not there anymore.  For example, the failure might have been a unique key
violation in some index or other.  Not only is the bad tuple already on
disk, but possibly so are index entries for it in other indexes.  In
general the only way to get rid of those index entries is a VACUUM.
So you really have to have a subtransaction whose XID is what you mark
the new tuple with, and then rolling back the subtransaction is what
causes the new tuple to not be seen as good.  (Actually getting rid of
it will be left for the next VACUUM.)
 
regards, tom lane
 
 
 
 
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????:AVG - www.avg.com
??:2013.0.3480 / ?????:3955/7691 - ????:06/17/14