Thread: Error while trying to back up database: out of memroy

Hi.

First of all, sorry for my English. I hope you'll understand me.

We have quite large database: about 10G with two tables with binary data (~7 Gb and ~2 Gb with 1-5 Mb rows, there are no rows bigger than 6 MBytes).

We have 8 Gb ram, enough swap and 32-bit RHEL4 (I know, this is not very good).

We're required to take nightly per-table backups. I've written python script for it and it was working for a year.

But now I'm getting following error:

pg_dump: WARNING:  terminating connection because of crash of another server process
DETAIL:  The postmaster has commanded this server process to roll back the current transaction and exit, because another server process exited abnormally a
nd possibly corrupted shared memory.
HINT:  In a moment you should be able to reconnect to the database and repeat your command.
pg_dump: Dumping the contents of table "binary1" failed: PQgetCopyData() failed.
pg_dump: Error message from server: server closed the connection unexpectedly
        This probably means the server terminated abnormally
        before or while processing the request.
pg_dump: The command was: COPY public.binary1 (pkid, obj, filename, contenttype) TO stdout;
pg_dump: [archiver (db)] connection to database "database" failed: FATAL:  the database system is in recovery mode
<database now in recovery mode and no longer accepts connections>

Sometimes it happens with binary2, sometimes it does not happens.

It seems postmaster eats a LOT of ram during backup, but I can't understand why and how to fix it. Please help.

Here is lines from postgres log:

<....>
Sep 22 01:00:59 db1 postgres[10553]: [2-1] user=,db= LOG:  server process (PID 17490) was terminated by signal 9: Killed
Sep 22 01:01:06 db1 postgres[10553]: [3-1] user=,db= LOG:  terminating any other active server processes
Sep 22 01:01:06 db1 postgres[14485]: [224-1] user=user,db=database WARNING:  terminating connection because of crash of another server proces
s
Sep 22 01:01:06 db1 postgres[14462]: [38-1] user=user,db=database WARNING:  terminating connection because of crash of another server process
Sep 22 01:01:06 db1 postgres[14485]: [224-2] user=u,db=d DETAIL:  The postmaster has commanded this server process to roll back the
 current
Sep 22 01:01:06 db1 postgres[14485]: [224-3]  transaction and exit, because another server process exited abnormally and possibly corrupted shared memory.
Sep 22 01:01:06 db1 postgres[18037]: [256633-1] user=u,db=d WARNING:  terminating connection because of crash of another server pro
cess
Sep 22 01:01:06 db1 postgres[14899]: [493508-1] user=u,db=d WARNING:  terminating connection because of crash of another server pro
cess
Sep 22 01:01:06 db1 postgres[14899]: [493508-2] user=u,db=d DETAIL:  The postmaster has commanded this server process to roll back
the current
Sep 22 01:01:06 db1 postgres[17352]: [50-1] user=u,db=d WARNING:  terminating connection because of crash of another server process
Sep 22 01:01:06 db1 postgres[14899]: [493508-3]  transaction and exit, because another server process exited abnormally and possibly corrupted shared memor
y.
Sep 22 01:01:06 db1 postgres[14462]: [38-2] user=u,db=d DETAIL:  The postmaster has commanded this server process to roll back the curr
ent transaction
Sep 22 01:01:06 db1 postgres[18037]: [256633-2] user=u,db=d DETAIL:  The postmaster has commanded this server process to roll back
the current
Sep 22 01:01:06 db1 postgres[14485]: [224-4] user=u,db=d HINT:  In a moment you should be able to reconnect to the database and rep
eat your command.
Sep 22 01:01:06 db1 postgres[18346]: [3-1] user=u,db=d WARNING:  terminating connection because of crash of another server process
Sep 22 01:01:06 db1 postgres[17098]: [5-1] user=u,db=d WARNING:  terminating connection because of crash of another server process
Sep 22 01:01:06 db1 postgres[17098]: [5-2] user=u,db=d DETAIL:  The postmaster has commanded this server process to roll back the current
transaction and
Sep 22 01:01:06 db1 postgres[17098]: [5-3]  exit, because another server process exited abnormally and possibly corrupted shared memory.
<...>


And here is dmesg:

Free pages:     1523292kB (1510016kB HighMem)
Active:439981 inactive:1048491 dirty:355684 writeback:0 unstable:0 free:380823 slab:44677 mapped:85734 pagetables:1714
DMA free:12588kB min:16kB low:32kB high:48kB active:0kB inactive:0kB present:16384kB pages_scanned:823719 all_unreclaimable? yes
protections[]: 0 0 0
Normal free:688kB min:928kB low:1856kB high:2784kB active:3068kB inactive:3044kB present:901120kB pages_scanned:7524 all_unreclaimable? yes
protections[]: 0 0 0
HighMem free:1510016kB min:512kB low:1024kB high:1536kB active:1756856kB inactive:4190920kB present:7995392kB pages_scanned:0 all_unreclaimable? no
protections[]: 0 0 0
DMA: 1*4kB 3*8kB 3*16kB 3*32kB 4*64kB 1*128kB 1*256kB 1*512kB 1*1024kB 1*2048kB 2*4096kB = 12588kB
Normal: 0*4kB 0*8kB 7*16kB 0*32kB 1*64kB 0*128kB 2*256kB 0*512kB 0*1024kB 0*2048kB 0*4096kB = 688kB
HighMem: 190092*4kB 37922*8kB 5006*16kB 5751*32kB 2746*64kB 48*128kB 1*256kB 0*512kB 0*1024kB 0*2048kB 0*4096kB = 1510016kB
Swap cache: add 1759101, delete 1758447, find 1522743/1668224, race 3+238
158914 bounce buffer pages
Free swap:       5417376kB
2228224 pages of RAM
1867710 pages of HIGHMEM
150044 reserved pages
1200940 pages shared
660 pages swap cached
Out of Memory: Killed process 18141 (postmaster).


============================================

#!/usr/bin/env python

import os
import datetime
import sys

import _pg as pg

## settings
###########################################################
host = "localhost"
user = "user"
dbs = ("database", ) # list of databases to backup

backup_path_tables = "/bla-bla-bla/dumps/"
###########################################################
## end of settings

date = datetime.date.today().strftime("%Y_%m_%d")

# 1: dump tables
for db in dbs:
    dbh = pg.connect(db, host, -1, None, None, user, password)
    ret = dbh.query("SELECT tablename FROM pg_tables WHERE  schemaname='public';")
    for row in ret.dictresult():
        table = row['tablename']
        if table <> 'binobject':
            print "Dumping table '%s' from db '%s' " % (table, db)
            os.system("pg_dump -F p " + db + " -U " + user + " -t " + table + " > " + backup_path_tables + "/" + db + "_" + table + "_" + date + ".sql")

--
Vladimir Rusinov
http://greenmice.info/