Re: GCC error and libmpfr.so.4 not found - Mailing list pgsql-general
From | Jimmy Yih |
---|---|
Subject | Re: GCC error and libmpfr.so.4 not found |
Date | |
Msg-id | CAOMx_OAR0=7Ynf0cD4_4R4CcRcKa4MS42cFvv1aAnFZJWVcb0A@mail.gmail.com Whole thread Raw |
In response to | Re: GCC error and libmpfr.so.4 not found (Asma Riyaz <asmariyaz23@gmail.com>) |
Responses |
Re: GCC error and libmpfr.so.4 not found
|
List | pgsql-general |
Hey Asma,
Did you check the linkage with ldd? For example on my blank RHEL 6.5 AWS VM using gcc 4.4.7:[jyih@test1 ~]$ ldd /usr/libexec/gcc/x86_64-redhat-linux/4.4.4/cc1
linux-vdso.so.1 => (0x00007fff9b9ff000)
libmpfr.so.1 => /usr/lib64/libmpfr.so.1 (0x00000033b8400000)
libgmp.so.3 => /usr/lib64/libgmp.so.3 (0x00000033b8000000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003c1e400000)
libc.so.6 => /lib64/libc.so.6 (0x0000003c1e800000)
/lib64/ld-linux-x86-64.so.2 (0x0000003c1e000000)
Most likely you should have an empty/broken libmpfr.so linkage. You can play around with LD_LIBRARY_PATH like so:
## create another libmpfr.so link in a different directory for example
[jyih@test1 ~]$ ls -al /usr/lib64/libmpfr*
lrwxrwxrwx. 1 root root 16 Jun 7 2014 /usr/lib64/libmpfr.so.1 -> libmpfr.so.1.2.0
-rwxr-xr-x. 1 root root 318408 Jun 23 2010 /usr/lib64/libmpfr.so.1.2.0
[jyih@test1 ~]$ ln -s /usr/lib64/libmpfr.so.1.2.0 /tmp/libmpfr.so.1
lrwxrwxrwx. 1 root root 16 Jun 7 2014 /usr/lib64/libmpfr.so.1 -> libmpfr.so.1.2.0
-rwxr-xr-x. 1 root root 318408 Jun 23 2010 /usr/lib64/libmpfr.so.1.2.0
[jyih@test1 ~]$ ln -s /usr/lib64/libmpfr.so.1.2.0 /tmp/libmpfr.so.1
## show that LD_LIBRARY_PATH is empty and then add new paths
[jyih@test1 ~]$ echo $LD_LIBRARY_PATH
[jyih@test1 ~]$ export LD_LIBRARY_PATH=/tmp:$LD_LIBRARY_PATH
[jyih@test1 ~]$ export LD_LIBRARY_PATH=/tmp:$LD_LIBRARY_PATH
## ldd shows new linking
[jyih@test1 ~]$ ldd /usr/libexec/gcc/x86_64-redhat-linux/4.4.4/cc1
linux-vdso.so.1 => (0x00007fff06dff000)
libmpfr.so.1 => /tmp/libmpfr.so.1 (0x00000033b8400000)
libgmp.so.3 => /usr/lib64/libgmp.so.3 (0x00000033b8000000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003c1e400000)
libc.so.6 => /lib64/libc.so.6 (0x0000003c1e800000)
/lib64/ld-linux-x86-64.so.2 (0x0000003c1e000000)
linux-vdso.so.1 => (0x00007fff06dff000)
libmpfr.so.1 => /tmp/libmpfr.so.1 (0x00000033b8400000)
libgmp.so.3 => /usr/lib64/libgmp.so.3 (0x00000033b8000000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003c1e400000)
libc.so.6 => /lib64/libc.so.6 (0x0000003c1e800000)
/lib64/ld-linux-x86-64.so.2 (0x0000003c1e000000)
Hope that helps!
- JimmyOn Thu, Jun 11, 2015 at 11:44 AM, Asma Riyaz <asmariyaz23@gmail.com> wrote:
Hi Jimmy,Here is what I did upon your suggestion;in bashrc:-LD_LIBRARY_PATH=/seq/annotation/bio_tools/BOOST/boost_1_46_1/lib
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/seq/regev_genome_portal/lib
sourced it and then exceuted /.configure as below:
./configure --prefix=/../../DATABASE/postgres
I get the same error log as before.
Asma
On Thu, Jun 11, 2015 at 1:30 PM, Jimmy Yih <jyih@pivotal.io> wrote:- JimmyHey Asma,Have you tried running ldd and checking the library linkage? You might be able to just add the different location to your LD_LIBRARY_PATH as a quick way to get this working.On Thu, Jun 11, 2015 at 7:46 AM, Asma Riyaz <asmariyaz23@gmail.com> wrote:I have a libmpfr.so.4 under a different location, which setting in configure should I use so that it uses the required library from that directory?I have used ./configure --prefix=/path/directory LIB=/path/to/libmpfr.so.4 but the config.log still shows that its looking for libmpfr.so.4 under the shared location as before. Any advice will be helpful.Thank you,AsmaOn Thu, Jun 11, 2015 at 10:34 AM, Geoff Winkless <pgsqladmin@geoff.dj> wrote:I have seen an earlier post with gcc errors, however I couldn't figure out what the actual problem here is: is it that libmpfr.so.4 is not found? or gcc needs to be installed fresh?libmpfr. Unless I've misunderstood, the other errors are simply configure trying to work out which compiler you're running - -V and -qversion simply aren't valid flags to gcc - so those "error" lines are expected result.Geoff
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