Re: What is the posix_memalign() equivalent for the PostgreSQL? - Mailing list pgsql-hackers

From Anderson Carniel
Subject Re: What is the posix_memalign() equivalent for the PostgreSQL?
Date
Msg-id CAAAXyN1+Viz1QYmGwjT=MADWeqH_9PM3Df953A6jPADEmp-1yA@mail.gmail.com
Whole thread Raw
In response to Re: What is the posix_memalign() equivalent for the PostgreSQL?  (Craig Ringer <craig@2ndquadrant.com>)
Responses Re: What is the posix_memalign() equivalent for the PostgreSQL?
List pgsql-hackers
The unexpected errors are problems to free the memory that was previously allocated with posix_memalign. After a number of memory allocation and free calls, the next free call crashes the system.

On the other hand, if I replace the posix_memalign and the free calls for the following malloc/free aligned implementations, it works. 


void *malloc_aligned(size_t alignment, size_t bytes) {
    void *mallocPtr;        //Initial pointer returned from malloc
    void *newMallocPtr;    //New pointer after adjustment
    void *alignedPtr;    
    size_t alignMask;        //Need this to get the aligned address
    size_t totalBytes = 0;    
 
    /* Make sure alignment is power of 2 and it is not zero
     * because zero is not power of 2 */
    if ( !(!(alignment & (alignment-1)) && alignment) )
        return NULL;
 
    /* We need to allocate extra memory to make sure the allocated 
     * memory will be aligned and need sizeof(size_t) bytes more for
     * storing the value of the bytes we padded. 
     */      
       totalBytes = bytes + alignment + sizeof(size_t);
 
    mallocPtr = palloc(totalBytes);
 
    if (NULL == mallocPtr)
        return NULL;
 
    newMallocPtr = (void*)((char*)mallocPtr + sizeof(size_t));
 
    alignMask = ~(alignment - 1); 
 
    /* Value of alignedPtr should be multiple of alignment */    
    alignedPtr = (void *)(((size_t)newMallocPtr + alignment) & alignMask);
 
    /* Store the extra bytes info right before alignedPtr */
    *((size_t*)alignedPtr - 1) = (size_t)alignedPtr - (size_t)mallocPtr;
 
    return alignedPtr;
}

void free_aligned(void *raw_data) {
    void *mallocPtr;    //Initial malloc pointer
    size_t extraBytes;
 
    if (NULL == raw_data)
        return;
 
    /* Retrieve the extra padded byte info */
    extraBytes = *((size_t*)raw_data - 1);
 
    /* Get initial malloc ptr */
    mallocPtr = (void*) ((size_t)raw_data - extraBytes);
 
    pfree(mallocPtr);
}

Please note that I am using in these functions, the palloc and pfree instead of malloc and free respectively. But the problem is that the free_aligned function is not indeed freeing the allocated memory. Thus, I would like to know if the PostgreSQL provides a memory function that allocates aligned memory. If not, according to your experience, is there a significance difference between the performance of the O_DIRECT or not?

Thank you,
Anderson

2016-09-02 7:24 GMT-03:00 Craig Ringer <craig@2ndquadrant.com>:
On 2 September 2016 at 01:12, Anderson Carniel <accarniel@gmail.com> wrote:
> Dear all,
>
> I am developing an extension for the PostgreSQL that write/read some
> external files from the PostgreSQL. In order to write/read, I am using the
> O_DIRECT flag and using the posix_memalign to allocate memory. I would like
> to know if the postgresql internal library provides an equivalent function
> for the posix_memalign since I am getting unexpected errors.

"unexpected errors". Details please?

If you're trying to allocate aligned memory, I believe PostgreSQL
typically uses the TYPEALIGN macros (see c.h) but I'm painfully
clueless in the area, so ... yeah. Don't trust me.

I was a bit surprised not to see a MemoryContextAlloc or palloc
variant that returns memory aligned to a given boundary.

> All my
> allocations are in the TopMemoryContext since I am working with several
> buffers that must be alive while the PostgreSQL Server is activated.

You can't posix_memalign into TopMemoryContext. Such memory is outside
the memory context system, like memory directly malloc()'d.

--
 Craig Ringer                   http://www.2ndQuadrant.com/
 PostgreSQL Development, 24x7 Support, Training & Services

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