So it is possible that if I had a fast scsi drive, the performance might
be better?
On Thu, 2003-07-31 at 16:31, Joe Conway wrote:
> Scott Cain wrote:
> > Index Scan using feature_pkey on feature (cost=0.00..3.01 rows=1
> > width=153) (actual time=954.13..954.14 rows=1 loops=1)
> > Index Cond: (feature_id = 1)
> > Total runtime: 954.26 msec
> > (3 rows)
> >
> > Whoa! That's not what I expected, the time to do the query got more
> > that twice as long. So I think, maybe it was just an unlucky section,
> > and overall performance will be much better. So I write a perl script
> > to do substring queries over all of my chromosomes at various positions
> > and lengths (20,000 queries total). For comparison, I also ran the same
> > script, extracting the chromosomes via sql and doing the substring in
> > perl. Here's what happened:
>
> Hmmm, what happens if you compare with a shorter substring, e.g.:
>
> explain analyze select substring(residues from 1000000 for 2000)
> from feature where feature_id=1;
>
> I'm just guessing, but it might be that the extra I/O time to read 20K
> of uncompressed text versus the smaller compressed text is enough to
> swamp the time saved from not needing to uncompress.
>
> Any other ideas out there?
>
> Joe
--
------------------------------------------------------------------------
Scott Cain, Ph. D. cain@cshl.org
GMOD Coordinator (http://www.gmod.org/) 216-392-3087
Cold Spring Harbor Laboratory
