Re: slow join not using index properly - Mailing list pgsql-performance

Hi Stefan!

Probably you need to rewrite your query like this (check it first):

with RECURSIVE qq(cont_key, anc_key) as
(
select min(a1.context_key), ancestor_key from virtual_ancestors a1
 union select
  (SELECT
    a1.context_key, ancestor_key
  FROM
    virtual_ancestors a1 where context_key > cont_key order by
context_key limit 1) from qq where cont_key is not null
)
select a1.cont_key
 from qq a1, collection_data, virtual_ancestors a2
WHERE
    a1.anc_key =  collection_data.context_key

    AND collection_data.collection_context_key = a2.context_key
    AND a2.ancestor_key = ?

best regards,
Ilya

On Fri, Mar 21, 2014 at 12:56 AM, Stefan Amshey <sramshey@gmail.com> wrote:
> We have a slow performing query that we are trying to improve, and it
> appears to be performing a sequential scan at a point where it should be
> utilizing an index. Can anyone tell me why postgres is opting to do it this
> way?
>
> The original query is as follows:
>
> SELECT DISTINCT
>     a1.context_key
> FROM
>     virtual_ancestors a1, collection_data, virtual_ancestors a2
> WHERE
>     a1.ancestor_key =  collection_data.context_key
>     AND collection_data.collection_context_key = a2.context_key
>     AND a2.ancestor_key = ?
>
> The key relationships should all using indexed columns, but the query plan
> that postgres comes up with ends up performing a sequential scan on the
> collection_data table (in this case about 602k rows) where we would have
> expected it to utilize the index:
>
>  HashAggregate  (cost=60905.73..60935.73 rows=3000 width=4) (actual
> time=3366.165..3367.354 rows=3492 loops=1)
>    Buffers: shared hit=16291 read=1222
>    ->  Nested Loop  (cost=17546.26..60898.23 rows=3000 width=4) (actual
> time=438.332..3357.918 rows=13037 loops=1)
>          Buffers: shared hit=16291 read=1222
>          ->  Hash Join  (cost=17546.26..25100.94 rows=98 width=4) (actual
> time=408.554..415.767 rows=2092 loops=1)
>                Hash Cond: (a2.context_key =
> collection_data.collection_context_key)
>                Buffers: shared hit=4850 read=3
>                ->  Index Only Scan using virtual_ancestors_pkey on
> virtual_ancestors a2  (cost=0.00..233.32 rows=270 width=4) (actual
> time=8.532..10.703 rows=1960 loops=1)
>                      Index Cond: (ancestor_key = 1072173)
>                      Heap Fetches: 896
>                      Buffers: shared hit=859 read=3
>                ->  Hash  (cost=10015.56..10015.56 rows=602456 width=8)
> (actual time=399.708..399.708 rows=602570 loops=1)
>                      Buckets: 65536  Batches: 1  Memory Usage: 23538kB
>                      Buffers: shared hit=3991
> ######## sequential scan occurs here ##########
>                      ->  Seq Scan on collection_data  (cost=0.00..10015.56
> rows=602456 width=8) (actual time=0.013..163.509 rows=602570 loops=1)
>                            Buffers: shared hit=3991
>          ->  Index Only Scan using virtual_ancestors_pkey on
> virtual_ancestors a1  (cost=0.00..360.70 rows=458 width=8) (actual
> time=1.339..1.403 rows=6 loops=2092)
>                Index Cond: (ancestor_key = collection_data.context_key)
>                Heap Fetches: 7067
>                Buffers: shared hit=11441 read=1219
>  Total runtime: 3373.058 ms
>
>
> The table definitions are as follows:
>
>   Table "public.virtual_ancestors"
>     Column    |   Type   | Modifiers
> --------------+----------+-----------
>  ancestor_key | integer  | not null
>  context_key  | integer  | not null
>  degree       | smallint | not null
> Indexes:
>     "virtual_ancestors_pkey" PRIMARY KEY, btree (ancestor_key, context_key)
>     "virtual_context_key_idx" btree (context_key)
> Foreign-key constraints:
>     "virtual_ancestors_ancestor_key_fkey" FOREIGN KEY (ancestor_key)
> REFERENCES contexts(context_key)
>     "virtual_ancestors_context_key_fkey" FOREIGN KEY (context_key)
> REFERENCES contexts(context_key)
>
>              Table "public.collection_data"
>          Column              |         Type         | Modifiers
> ------------------------+----------------------+-----------
>  collection_context_key | integer              | not null
>  context_key                | integer              | not null
>  type                            | character varying(1) | not null
>  source                        | character varying(1) | not null
> Indexes:
>     "collection_data_context_key_idx" btree (context_key)
>     "collection_data_context_key_index" btree (collection_context_key)
> CLUSTER
> Foreign-key constraints:
>     "collection_data_collection_context_key_fkey" FOREIGN KEY
> (collection_context_key) REFERENCES contexts(context_key) ON DELETE CASCADE
>     "collection_data_context_key_fkey" FOREIGN KEY (context_key) REFERENCES
> contexts(context_key) ON DELETE CASCADE
>
> Can anyone suggest a way that we can get postgres to use the
> collection_data_context_key_index properly? I thought that it might be
> related to the fact that collection_data_context_key_index is a CLUSTERED
> index, but we did some basic experimentation that seems to indicate
> otherwise, i.e. the bad plan persists despite re-clustering the index.
>
> We are using PostgreSQL 9.2.5 on x86_64-unknown-linux-gnu, compiled by gcc
> (Debian 4.4.5-8) 4.4.5, 64-bit
>
> Interestingly, on an instance running PostgreSQL 9.2.4 on
> x86_64-unknown-linux-gnu, compiled by gcc (Debian 4.4.5-8) 4.4.5, 64-bit
> where I copied the 2 tables over to a temporary database, the plan comes out
> differently:
>
>  HashAggregate  (cost=39692.03..39739.98 rows=4795 width=4) (actual
> time=73.285..75.141 rows=3486 loops=1)
>    Buffers: shared hit=22458
>    ->  Nested Loop  (cost=0.00..39680.05 rows=4795 width=4) (actual
> time=0.077..63.116 rows=13007 loops=1)
>          Buffers: shared hit=22458
>          ->  Nested Loop  (cost=0.00..32823.38 rows=164 width=4) (actual
> time=0.056..17.685 rows=2084 loops=1)
>                Buffers: shared hit=7529
>                ->  Index Only Scan using virtual_ancestors_pkey on
> virtual_ancestors a2  (cost=0.00..1220.85 rows=396 width=4) (actual
> time=0.025..2.732 rows=1954 loops=1)
>                      Index Cond: (ancestor_key = 1072173)
>                      Heap Fetches: 1954
>                      Buffers: shared hit=1397
> ######## Note the index scan here - this is what it SHOULD be doing
> ##############
>                ->  Index Scan using collection_data_context_key_index on
> collection_data  (cost=0.00..79.24 rows=56 width=8) (actual
> time=0.004..0.005 rows=1 loops=1954)
>                      Index Cond: (collection_context_key = a2.context_key)
>                      Buffers: shared hit=6132
>          ->  Index Only Scan using virtual_ancestors_pkey on
> virtual_ancestors a1  (cost=0.00..35.40 rows=641 width=8) (actual
> time=0.007..0.015 rows=6 loops=2084)
>                Index Cond: (ancestor_key = collection_data.context_key)
>                Heap Fetches: 13007
>                Buffers: shared hit=14929
>  Total runtime: 76.431 ms
>
> Why can't I get the Postgres 9.2.5 instance to use the optimal plan?
>
> Thanks in advance!
>      /Stefan
>
> --
> -
> Stefan Amshey

--
Ilya Kosmodemiansky,

PostgreSQL-Consulting.com
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