Re: full outer performance problem - Mailing list pgsql-performance

Kim Bisgaard wrote:
> Hi,
>
> I'm having problems with the query optimizer and FULL OUTER JOIN on
> PostgreSQL 7.4. I cannot get it to use my indexes with full outer joins.
> I might be naive, but I think that it should be possible?
>
> I have two BIG tables (virtually identical) with 3 NOT NULL columns
> Station_id, TimeObs, Temp_XXXX, with indexes on (Station_id, TimeObs)
> and valid ANALYSE (set statistics=100). I want to join the two tables
> with a FULL OUTER JOIN.
>
> When I specify the query as:
>
> select temp_max_60min,temp_dry_at_2m
> from station s natural join
> temp_dry_at_2m a full outer join temp_max_60min b using (station_id, timeobs)
> where s.wmo_id=6065
> and timeobs='2004-1-1 0:0:0'
> and '2004-1-1 0:0:0' between s.startdate and s.enddate;
>
> I get the correct results, BUT LOUSY performance, and the following explain:
>
>  Nested Loop Left Join  (cost=5.84..163484.08 rows=1349 width=12) (actual time=66146.815..119005.381 rows=1 loops=1)
>    Filter: (COALESCE("outer".timeobs, "inner".timeobs) = '2004-01-01 00:00:00'::timestamp without time zone)
>    ->  Hash Join  (cost=5.84..155420.24 rows=1349 width=16) (actual time=8644.449..110836.038 rows=109826 loops=1)

Well, the estimate here is quite a bit off. It thinks you will be
getting 1349 (which is probably why it picked a nested loop plan), but
then it is getting 109826 rows.
I'm guessing it is misunderstanding the selectivity of the timeobs column.

>          Hash Cond: ("outer".station_id = "inner".station_id)
>          ->  Seq Scan on temp_dry_at_2m a  (cost=0.00..120615.94 rows=6956994 width=16) (actual
time=0.024..104548.515rows=6956994 loops=1) 
>          ->  Hash  (cost=5.84..5.84 rows=1 width=4) (actual time=0.114..0.114 rows=0 loops=1)
>                ->  Index Scan using wmo_idx on station  (cost=0.00..5.84 rows=1 width=4) (actual time=0.105..0.108
rows=1loops=1) 
>                      Index Cond: ((wmo_id = 6065) AND ('2004-01-01 00:00:00'::timestamp without time zone >=
startdate)AND ('2004-01-01 00:00:00'::timestamp without time zone <= enddate)) 
>    ->  Index Scan using temp_max_60min_idx on temp_max_60min b  (cost=0.00..5.96 rows=1 width=20) (actual
time=0.071..0.071rows=0 loops=109826) 
>          Index Cond: (("outer".station_id = b.station_id) AND ("outer".timeobs = b.timeobs))
>  Total runtime: 119005.499 ms
> (11 rows)

I think the bigger problem is that a full outer join says grab all rows,
even if they are null.

What about this query:
SELECT temp_max_60min,temp_dry_at_2m
   FROM (station s LEFT JOIN temp_dry_at_2m a USING (station_id, timeobs)
        LEFT JOIN temp_max_60min b USING (station_id, timeobs)
where s.wmo_id=6065
and timeobs='2004-1-1 0:0:0'
and '2004-1-1 0:0:0' between s.startdate and s.enddate;

After that, you should probably have a multi-column index on
(station_id, timeobs), which lets postgres use just that index for the
lookup, rather than using an index and then a filter. (Looking at your
next query you might already have that index).

>
> If I change the query to (and thus negates the full outer join):

This is the same query, I think you messed up your copy and paste.

>
> select temp_max_60min,temp_dry_at_2m
> from station s natural join
> temp_dry_at_2m a full outer join temp_max_60min b using (station_id, timeobs)
> where s.wmo_id=6065
> and _a.timeobs='2004-1-1 0:0:0' and b._timeobs='2004-1-1 0:0:0'
> and '2004-1-1 0:0:0' between s.startdate and s.enddate;
>
>
> I get wrong results (In the case where one of the records is missing in
> one of the tables), BUT GOOD performance, and this query plan:
>
>  Nested Loop  (cost=0.00..17.83 rows=1 width=12) (actual time=79.221..79.236 rows=1 loops=1)
>    ->  Nested Loop  (cost=0.00..11.82 rows=1 width=24) (actual time=65.517..65.526 rows=1 loops=1)
>          ->  Index Scan using wmo_idx on station  (cost=0.00..5.83 rows=1 width=4) (actual time=0.022..0.026 rows=1
loops=1)
>                Index Cond: ((wmo_id = 6065) AND ('2004-01-01 00:00:00'::timestamp without time zone >= startdate) AND
('2004-01-0100:00:00'::timestamp without time zone <= enddate)) 
>          ->  Index Scan using temp_max_60min_idx on temp_max_60min b  (cost=0.00..5.97 rows=1 width=20) (actual
time=65.483..65.486rows=1 loops=1) 
>                Index Cond: (("outer".station_id = b.station_id) AND (b.timeobs = '2004-01-01 00:00:00'::timestamp
withouttime zone)) 
>    ->  Index Scan using temp_dry_at_2m_idx on temp_dry_at_2m a  (cost=0.00..6.00 rows=1 width=16) (actual
time=13.694..13.698rows=1 loops=1) 
>          Index Cond: (("outer".station_id = a.station_id) AND (a.timeobs = '2004-01-01 00:00:00'::timestamp without
timezone)) 
>  Total runtime: 79.340 ms
> (9 rows)
>
>
> If further info like EXPLAIN VERBOSE is useful please say so and I will
> provide it.
>
> Thanks in advance!
> Kim Bisgaard.

I still feel like you will have a problem with an outer join in this
circumstance, because it will have to scan all of both tables.

I think what you are wanting is "give me everything where station_id =
X, and there is a row in either a or b".
I think my LEFT JOIN example does that, but I also think there would be
a subselect form which would work, which might do better. Something like:

SELECT temp_max_60min,temp_dry_at_2m
    FROM (SELECT station_id, timeobs FROM station s
           WHERE s.wmo_id=6065
             AND timeobs = '2004-1-1 0:0:0'
             AND '2004-1-1 0:0:0' BETWEEN s.startdate AND s.enddate
          ) AS s
    JOIN (SELECT temp_max_60min, temp_dry_at_2m
        FROM temp_dry_at_2m a
        FULL OUTER JOIN temp_max_60min b
        USING (station_id, timeobs)
        WHERE station_id = s.station_id
          AND timeobs = '2004-1-1 0:0:0'
         )
;

If I did this correctly, you should have a very restrictive scan done on
station, which only returns a few rows based on timeobs & station_id.
But it might be better to turn that final FULL OUTER JOIN into 2 LEFT
JOINs like I did the first time:

SELECT temp_max_60min,temp_dry_at_2m
    FROM (SELECT station_id, timeobs FROM station s
           WHERE s.wmo_id=6065
             AND timeobs = '2004-1-1 0:0:0'
             AND '2004-1-1 0:0:0' BETWEEN s.startdate AND s.enddate
          ) AS s
    LEFT JOIN temp_dry_at_2m a USING (station_id, timeobs)
    LEFT JOIN temp_max_60min b USING (station_id, timeobs)
;

I would hope postgres could do this from just my earlier plan. And I
hope I understand what you want, such that 2 LEFT JOINS work better than
your FULL OUTER JOIN. If you only want rows where one of both temp_dry
or temp_max exist, you probably could just add the line:

WHERE (temp_max_60_min IS NOT NULL OR temp_dry_at_2m IS NOT NULL)


John
=:->